The comic tells the adventures of a young, impatient, human boy named Ginji, who transforms into a Torchic, finds himself in a new world, and meets a timid Mudkip who wants to be part of a rescue team. Throughout the comics, Ginji shows a huge desire to become human again.

Pokémon Fushigi no Dungeon: Ginji no Kyuujotai was published in English as Pokémon Mystery Dungeon: Ginji's Rescue Team by Viz Media on March 6, 2007.